Andromeda - Season 2 (2001)

A planet asks the Andromeda for help when its cargo vessels are attacked by unknown vessels. Trance goes down to the planet to find out more about the people, and ends up being interrogated about her past.

The crew searches for people to organize the new Commonwealth. They search for Ortiz, who was able to organize a few systems then had to go into hiding. The crew must find/protect Ortiz.

Harper, Rev, Tyr wait for Rommie in the Maru. Rommie's on a mission to find out about a new weapon being developed. Once their contact find out she's an AI, he becomes wary of Rommie. The AIs on the planet had revolted against their creators years ago.

In an attempt to allow the Andromeda, and the unarmed fleet she's escorting, ass through a Drago-Kazov controlled system, Dylan and Tyr assault a base controlling old High Guard turrets along the route, but one of the convoy ships gets lost, so Beka takes the Maru to look for it.

The crew gets news of a colony that was formed when Dylan's Fiancee' escaped the fall of the Commonwealth. The colony has flourished. They have heard of the new Commonwealth. Some want to join, others feel they shouldn't. Some are willing to do anything to swing the vote their way.

While the Andromeda is hosting a diplomatic conference, Harper encounters a reporter who is able to remove the Magog larvae from his guts. She offers to remove them all in exchange for the information Harper previously had downloaded into his brain. A high-ranking member of the Sabra-Jaguar pride arrives at the conference unannounced to join the Commonwealth.

The Royal family flee their planet when a coup starts. Andromeda manages to rescue one member of the royal family, a young prince. Andromeda escorts him back to his home world, where they hope to get him back on the throne. The prince asks Tyr and Dylan to act as his advisers. Each of them teach the young prince how to lead, which method will the prince choose in the end?

The Sabra-Jaguar pride goes to war with the Drago-Kazov, pulling Dylan and the Andromeda along with them, as per the terms of the Commonwealth treaty. Harper receives a message from a friend on Earth pledging his support for driving the Drago-Kazov clan off of Earth. Harper attempts to get the crew of the Andromeda to head for Earth to liberate it, but Dylan refuses to take the Andromeda to Earth. Instead, Harper takes the Maru with Rommie in tow to help with the resistance.

The Magog eggs in Harper's belly are close to hatching. Harper and Hoone work on a device to bend time and space to extract the eggs. But the device has unforeseen consequences. Future selves, old allies, old/new enemies all collide on Andromeda.

Tyr and Dylan try to buy parts. When they're attacked, they agree to separate. Tyr returns to the Andromeda. Dylan co-opts a space-tourist ship and its female pilot, to escape. Tyr and Rommie use the Maru to rescue the ship's lifeboat.

Beka receives news of a former crew-member's death and that she was named as his next-of-kin in his will. As they travel to claim his belongings, Harper and Beka tell Dylan more about their comrade.

Andromeda encounters a badly damaged vessel and rescues the survivors. They discover the Than had been attacking the vessel, and they return to finish the job. Then the casualties from the vessel come to life and try to infect the crew. Can the crew find a way to stop the attacks and keep the causalities down permanently?

Beka leads Trance and Dylan on a quest for the Engine of Creation.

While investigating a black hole, the Maru suffers a hull breach with Dylan on board. He wakes up to find himself in bed with his wife, his son charging into the room excited about his ballgame. Meanwhile, the crew of the Andromeda attempt to recover Dylan and the Maru. Dylan has flashbacks to his time on the Andromeda, while his wife pressures him to retire from the High Guard.

The Andromeda finds a Calderan ship ravaged by what appears to be a Vedran, the creator race of the first Commonwealth. Dylan decides to find the Vedran on Ral Parthea, the nature reserve planet dear to the Vedrans.

Andromeda investigates a "mythical" beast that eats planets. They soon discover it's real and are promptly swallowed by the beast. With Dylan on the outside trying to figure out how to save his ship and crew, each member of the crew is plagued by doubts about their mission on board the Andromeda

Andromeda gets word of a fleet of Highguard ships in Tartarus. Dylan, Rommie and Tyr go after Ryan, an AI with knowledge of the location. But Ryan has a history with the fleet, which creates difficulties when they finally locate the fleet. Beka, Harper, and Trance, work on get more worlds to join the Commonwealth.

The knights of Genetic purity start attacking a cluster of Nietchean prides. Andromeda tries to stop them. Tyr searches for Orca pride, Freya has given birth to his son, the genetic reincarnation of Drago Museveni. He'll do anything to protect them.

At finally achieving his goal of fifty parties willing to join the New Commonwealth, Dylan hosts the signing of the New Commonwealth charter on board the Andromeda. With all the delegates aboard, he takes them to a barren system to avoid any interference from outside sources, but does not succeed. He finds that Andromeda now has other passengers on board, who can phase through walls and make themselves invisible. Worse yet, these intruders seem intent on killing everyone on board, starting with the delegates. Trance reveals that when this happened before only she and ...